Commit 8d6c71f8 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Moved gatk extension to public

parent 98adc5f5
......@@ -22,9 +22,8 @@ package nl.lumc.sasc.biopet.extensions.gatk.broad
import nl.lumc.sasc.biopet.core._
import org.broadinstitute.gatk.engine.phonehome.GATKRunReport
import org.broadinstitute.gatk.queue.extensions.gatk.CommandLineGATK
trait GatkGeneral extends CommandLineGATK with CommandLineResources with Reference with Version {
trait GatkGeneral extends org.broadinstitute.gatk.queue.extensions.gatk.CommandLineGATK with CommandLineResources with Reference with Version {
var executable: String = config("java", default = "java", namespace = "java", freeVar = false)
override def subPath = "gatk" :: super.subPath
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