From 8c9dcb5b77daafa4d34b309f1715a58e015635b6 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Sat, 7 Mar 2015 17:59:23 +0100
Subject: [PATCH] Fix memlimit
---
.../lumc/sasc/biopet/core/BiopetJavaCommandLineFunction.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetJavaCommandLineFunction.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetJavaCommandLineFunction.scala
index b0657e369..38d0b5289 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetJavaCommandLineFunction.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetJavaCommandLineFunction.scala
@@ -39,7 +39,7 @@ trait BiopetJavaCommandLineFunction extends JavaCommandLineFunction with BiopetC
*/
override def beforeGraph {
super.beforeGraph
- memoryLimit = config("memory_limit")
+ if (memoryLimit.isEmpty) memoryLimit = config("memory_limit")
}
/**
--
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