From 89846ab2f7295aaf0d9949eebf366b7206f419ee Mon Sep 17 00:00:00 2001
From: Peter van 't Hof
Date: Tue, 17 Jan 2017 16:23:48 +0100
Subject: [PATCH] Changed error message
---
.../scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala b/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala
index c1cace9c5..0feeb3070 100644
--- a/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala
+++ b/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala
@@ -145,7 +145,7 @@ trait MultiSampleQScript extends SummaryQScript { qscript: QScript =>
ConfigUtils.getMapFromPath(globalConfig.map, List("samples", sampleId, "libraries")).getOrElse(Map()).keySet
} catch {
case e: IllegalStateException if e.getMessage == "Value is not a map: library" =>
- Logging.addError("libraries is not a map")
+ Logging.addError("libraries for samples are not formatted correctly")
Set()
}
if (ids.isEmpty) {
--
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