From 89846ab2f7295aaf0d9949eebf366b7206f419ee Mon Sep 17 00:00:00 2001 From: Peter van 't Hof Date: Tue, 17 Jan 2017 16:23:48 +0100 Subject: [PATCH] Changed error message --- .../scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala b/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala index c1cace9c5..0feeb3070 100644 --- a/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala +++ b/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala @@ -145,7 +145,7 @@ trait MultiSampleQScript extends SummaryQScript { qscript: QScript => ConfigUtils.getMapFromPath(globalConfig.map, List("samples", sampleId, "libraries")).getOrElse(Map()).keySet } catch { case e: IllegalStateException if e.getMessage == "Value is not a map: library" => - Logging.addError("libraries is not a map") + Logging.addError("libraries for samples are not formatted correctly") Set() } if (ids.isEmpty) { -- GitLab