diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/svcallers/Pindel.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/svcallers/Pindel.scala
index 44393b3fb54a8803fe9f3f6773a32a3a1c42ba5b..d732e3d107b82a25fe173b7924db5c3b391f3a3e 100644
--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/svcallers/Pindel.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/svcallers/Pindel.scala
@@ -31,7 +31,8 @@ class Pindel(val root: Configurable) extends SvCaller {
   /** Default pipeline config */
   override def defaults = Map(
     "pindelvcf" -> Map(
-      "rdate" -> new SimpleDateFormat("yyyyMMdd").format(Calendar.getInstance().getTime())
+      "rdate" -> new SimpleDateFormat("yyyyMMdd").format(Calendar.getInstance().getTime()),
+      "compact_output_limit" -> 10
     ))
 
   def biopetScript() {