Commit 869a6242 authored by Peter van 't Hof's avatar Peter van 't Hof

Fix override

parent af2af47f
...@@ -46,6 +46,7 @@ class CombineVariants(val root: Configurable) extends Gatk { ...@@ -46,6 +46,7 @@ class CombineVariants(val root: Configurable) extends Gatk {
} }
override def beforeGraph: Unit = { override def beforeGraph: Unit = {
super.beforeGraph
genotypeMergeOptions match { genotypeMergeOptions match {
case Some("UNIQUIFY") | Some("PRIORITIZE") | Some("UNSORTED") | Some("REQUIRE_UNIQUE") | None => case Some("UNIQUIFY") | Some("PRIORITIZE") | Some("UNSORTED") | Some("REQUIRE_UNIQUE") | None =>
case _ => throw new IllegalArgumentException("Wrong option for genotypeMergeOptions") case _ => throw new IllegalArgumentException("Wrong option for genotypeMergeOptions")
......
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