From 860441ab5ee6093c56cc29702d7292fe125db4ee Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 6 Apr 2015 10:03:43 +0200
Subject: [PATCH] Fix intervals
---
.../lumc/sasc/biopet/extensions/samtools/SamtoolsMpileup.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsMpileup.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsMpileup.scala
index 308a395a3..0ac4feac1 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsMpileup.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsMpileup.scala
@@ -30,7 +30,7 @@ class SamtoolsMpileup(val root: Configurable) extends Samtools {
@Input(doc = "Reference fasta")
var reference: File = config("reference")
- @Input(doc = "Interval bed")
+ @Input(doc = "Interval bed", required = false)
var intervalBed: Option[File] = config("interval_bed")
var disableBaq: Boolean = config("disable_baq", default = false)
--
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