diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsMpileup.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsMpileup.scala index 308a395a3a71f07a4400fd0ff90055528fc7a319..0ac4feac1587a26b18f0b85ba01422a6559a4f2b 100644 --- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsMpileup.scala +++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsMpileup.scala @@ -30,7 +30,7 @@ class SamtoolsMpileup(val root: Configurable) extends Samtools { @Input(doc = "Reference fasta") var reference: File = config("reference") - @Input(doc = "Interval bed") + @Input(doc = "Interval bed", required = false) var intervalBed: Option[File] = config("interval_bed") var disableBaq: Boolean = config("disable_baq", default = false)