Commit 85f7eb91 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Always execute fastqc_qc

parent 2d241e33
......@@ -250,7 +250,6 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
if (fastq_R1.length != fastq_R2.length && paired)
throw new IllegalStateException("R1 and R2 file number is not the same")
if (!skipTrim || !skipClip) {
if (fastq_R1.length > 1) {
add(Zcat(this, fastq_R1, fastqR1Qc) | new Gzip(this) > fastqR1Qc)
if (paired) add(Zcat(this, fastq_R2, fastqR2Qc.get) | new Gzip(this) > fastqR2Qc.get)
......@@ -268,7 +267,6 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
add(fastqc_R2_after)
addSummarizable(fastqc_R2_after, "fastqc_R2_qc")
}
}
addSummaryJobs()
}
......
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