From 84f861ecfa1cc959e11702d31e4f04755b2a50e5 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 16 Mar 2015 12:44:55 +0100
Subject: [PATCH] Fix memory requirements
---
.../src/main/scala/nl/lumc/sasc/biopet/tools/PrefixFastq.scala | 3 +++
1 file changed, 3 insertions(+)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/PrefixFastq.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/PrefixFastq.scala
index 913894418..ac15749eb 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/PrefixFastq.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/PrefixFastq.scala
@@ -31,6 +31,9 @@ import scala.collection.JavaConversions._
class PrefixFastq(val root: Configurable) extends BiopetJavaCommandLineFunction {
javaMainClass = getClass.getName
+ memoryLimit = Some(1.0)
+ override val defaultVmem = "4G"
+
@Input(doc = "Input fastq", shortName = "I", required = true)
var inputFastq: File = _
--
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