Commit 8452cc90 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed compile issue

parent 68488a9e
......@@ -34,7 +34,7 @@ object ReplaceContigsGtfFile extends ToolCommand {
columns(1).split(",").map(alterniveName => (alterniveName, newContig))
}
.toMap
reader.clone()
reader.close()
c.copy(contigs = c.contigs ++ map)
} text "File how to map contig names, first column is the new name, second column is coma separated list of alternative names"
}
......
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