Commit 82a8a2b6 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added workdirectory

parent 2127bf05
......@@ -34,6 +34,7 @@ class RunGubbins(val root: Configurable) extends BiopetCommandLineFunction {
override def afterGraph: Unit = {
super.afterGraph
jobLocalDir = new File(outputDirectory)
if (prefix == null) prefix = fastafile.getName
val out: List[String] = List(".recombination_predictions.embl",
".recombination_predictions.gff",
......
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