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biopet.biopet
Commits
82a8a2b6
Commit
82a8a2b6
authored
Dec 01, 2014
by
Peter van 't Hof
Browse files
Added workdirectory
parent
2127bf05
Changes
1
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/RunGubbins.scala
View file @
82a8a2b6
...
...
@@ -34,6 +34,7 @@ class RunGubbins(val root: Configurable) extends BiopetCommandLineFunction {
override
def
afterGraph
:
Unit
=
{
super
.
afterGraph
jobLocalDir
=
new
File
(
outputDirectory
)
if
(
prefix
==
null
)
prefix
=
fastafile
.
getName
val
out
:
List
[
String
]
=
List
(
".recombination_predictions.embl"
,
".recombination_predictions.gff"
,
...
...
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