Commit 81e75fbd authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Format fix

parent 1aea2582
package nl.lumc.sasc.biopet.pipelines.basty
import{File, FileOutputStream}
import{ File, FileOutputStream }
import nl.lumc.sasc.biopet.extensions.{Raxml, RunGubbins}
import nl.lumc.sasc.biopet.extensions.gatk.{BaseRecalibrator, IndelRealigner, PrintReads, RealignerTargetCreator}
import nl.lumc.sasc.biopet.extensions.{ Raxml, RunGubbins }
import nl.lumc.sasc.biopet.extensions.gatk.{ BaseRecalibrator, IndelRealigner, PrintReads, RealignerTargetCreator }
import nl.lumc.sasc.biopet.extensions.picard.MarkDuplicates
import{BastyGenerateFasta, VcfStats}
import nl.lumc.sasc.biopet.utils.{ConfigUtils, Logging}
import{ BastyGenerateFasta, VcfStats }
import nl.lumc.sasc.biopet.utils.{ ConfigUtils, Logging }
import nl.lumc.sasc.biopet.utils.config.Config
import org.broadinstitute.gatk.queue.QSettings
import org.scalatest.Matchers
import org.scalatest.testng.TestNGSuite
import org.testng.annotations.{DataProvider, Test}
import org.testng.annotations.{ DataProvider, Test }
* Created by pjvanthof on 27/09/16.
......@@ -27,7 +27,6 @@ class BastyTest extends TestNGSuite with Matchers {
@DataProvider(name = "bastyOptions")
def bastyOptions = {
for (
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