Commit 81ca7f7e authored by bow's avatar bow
Browse files

Fix variable name error in report template generator

parent 13647e73
......@@ -180,7 +180,7 @@ clipping and trimming of the reads.
Read 1 overall \%GC & ((( lib.fastqc_r1.basic_statistics.data["%GC"] ))) & ((( lib.fastqc_r1_qc.basic_statistics.data["%GC"] )))\\
Read 1 length range & ((( lib.fastqc_r1.basic_statistics.data["Sequence length"] ))) & ((( lib.fastqc_r1_qc.basic_statistics.data["Sequence length"] )))\\
\hline
((* if run.is_paired_end *))
((* if lib.is_paired_end *))
Read 2 count & ((( lib.fastqc_r2.basic_statistics.data["Total Sequences"] ))) & ((( lib.fastqc_r2_qc.basic_statistics.data["Total Sequences"] )))\\
Read 2 overall \%GC & ((( lib.fastqc_r2.basic_statistics.data["%GC"] ))) & ((( lib.fastqc_r2_qc.basic_statistics.data["%GC"] )))\\
Read 2 length range & ((( lib.fastqc_r2.basic_statistics.data["Sequence length"] ))) & ((( lib.fastqc_r2_qc.basic_statistics.data["Sequence length"] )))\\
......@@ -202,7 +202,7 @@ clipping and trimming of the reads.
Read 1 overall \%GC & ((( lib.fastqc_r1.basic_statistics.data["%GC"] )))\\
Read 1 length range & ((( lib.fastqc_r1.basic_statistics.data["Sequence length"] )))\\
\hline
((* if run.is_paired_end *))
((* if lib.is_paired_end *))
Read 1 count & ((( lib.fastqc_r1.basic_statistics.data["Total Sequences"] )))\\
Read 1 overall \%GC & ((( lib.fastqc_r1.basic_statistics.data["%GC"] )))\\
Read 1 length range & ((( lib.fastqc_r1.basic_statistics.data["Sequence length"] )))\\
......@@ -239,7 +239,7 @@ clipping and trimming of the reads.
%\label{fig:length_dist_before_and_after_1}
\end{figure}
((* if run.is_paired_end *))
((* if lib.is_paired_end *))
\begin{figure}[h!]
\centering
\begin{minipage}[b]{0.48\textwidth}
......@@ -295,7 +295,7 @@ clipping and trimming of the reads.
%\label{fig:per_base_qual_before_and_after_1}
\end{figure}
((* if run.is_paired_end *))
((* if lib.is_paired_end *))
\begin{figure}[h!]
\centering
\begin{minipage}[b]{0.48\textwidth}
......@@ -340,7 +340,7 @@ clipping and trimming of the reads.
%\label{fig:per_seq_qual_before_and_after_1}
\end{figure}
((* if run.is_paired_end *))
((* if lib.is_paired_end *))
\begin{figure}[h!]
\centering
\begin{minipage}[b]{0.48\textwidth}
......@@ -394,7 +394,7 @@ clipping and trimming of the reads.
%\label{fig:per_base_content_before_and_after_1}
\end{figure}
((* if run.is_paired_end *))
((* if lib.is_paired_end *))
\begin{figure}[h!]
\centering
\begin{minipage}[b]{0.48\textwidth}
......@@ -448,7 +448,7 @@ clipping and trimming of the reads.
%\label{fig:per_base_content_before_and_after_1}
\end{figure}
((* if run.is_paired_end *))
((* if lib.is_paired_end *))
\begin{figure}[h!]
\centering
((* if lib.trimming or lib.clipping *))
......
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