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biopet.biopet
Commits
811fe4c2
Commit
811fe4c2
authored
Apr 14, 2017
by
Peter van 't Hof
Committed by
GitHub
Apr 14, 2017
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Merge pull request #73 from biopet/fix-BIOPET-649
Fix CleverFixVCF memory issue
parents
8fa9668a
5de27e08
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/clever/CleverFixVCF.scala
.../nl/lumc/sasc/biopet/extensions/clever/CleverFixVCF.scala
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/clever/CleverFixVCF.scala
View file @
811fe4c2
...
@@ -38,6 +38,8 @@ class CleverFixVCF(val parent: Configurable) extends BiopetJavaCommandLineFuncti
...
@@ -38,6 +38,8 @@ class CleverFixVCF(val parent: Configurable) extends BiopetJavaCommandLineFuncti
@Argument
(
doc
=
"Samplename"
)
@Argument
(
doc
=
"Samplename"
)
var
sampleName
:
String
=
_
var
sampleName
:
String
=
_
override
def
defaultCoreMemory
=
4.0
override
def
cmdLine
=
super
.
cmdLine
+
override
def
cmdLine
=
super
.
cmdLine
+
required
(
"-i"
,
input
)
+
required
(
"-i"
,
input
)
+
required
(
"-o"
,
output
)
+
required
(
"-o"
,
output
)
+
...
...
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