From 806133cdc4fc72cd9688d714c404e269b7c9bb98 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Sun, 13 Sep 2015 09:48:41 +0200
Subject: [PATCH] Move test resources
---
.../src/test/resources/README.txt | 0
.../src/test/resources/VCFv3.vcf | 0
.../src/test/resources/VEP_oneline.vcf | 0
.../src/test/resources/VEP_oneline.vcf.gz | Bin
.../src/test/resources/VEP_oneline.vcf.gz.tbi | Bin
.../src/test/resources/chrQ.vcf | 0
.../src/test/resources/chrQ.vcf.gz | Bin
.../src/test/resources/chrQ.vcf.gz.tbi | Bin
.../src/test/resources/chrQ2.vcf | 0
.../src/test/resources/chrQ2.vcf.gz | Bin
.../src/test/resources/chrQ2.vcf.gz.tbi | Bin
.../src/test/resources/chrQ_allN.fa | 0
.../src/test/resources/chrQ_allN.fa.fai | 0
.../src/test/resources/fake_chrQ.dict | 0
.../src/test/resources/fake_chrQ.fa | 0
.../src/test/resources/fake_chrQ.fa.fai | 0
.../src/test/resources/flagstat_crossreport.txt | 0
.../src/test/resources/flagstat_crosstrue.txt | 0
.../src/test/resources/flagstat_report.txt | 0
.../src/test/resources/flagstat_summary.txt | 0
.../src/test/resources/mini.transcriptome.fa | 0
.../src/test/resources/no_sample.tsv | 0
.../src/test/resources/number.tsv | 0
.../src/test/resources/paired01.bam | Bin
.../src/test/resources/paired01.bam.bai | Bin
.../src/test/resources/paired01.pileup | 0
.../src/test/resources/paired01.sam | 0
.../src/test/resources/paired01a.fq | 0
.../src/test/resources/paired01b.fq | 0
.../src/test/resources/paired02.bam | Bin
.../src/test/resources/paired02.bam.bai | Bin
.../src/test/resources/paired02.sam | 0
.../src/test/resources/paired03.bam | Bin
.../src/test/resources/paired03.bam.bai | Bin
.../src/test/resources/paired03.sam | 0
.../src/test/resources/rrna01.bed | 0
.../src/test/resources/rrna01.gtf | 0
.../src/test/resources/rrna01.refFlat | 0
.../src/test/resources/rrna02.bed | 0
.../src/test/resources/sageAllGenesTest.tsv | 0
.../src/test/resources/sageNoAntiTest.tsv | 0
.../src/test/resources/sageNoTagsTest.tsv | 0
.../src/test/resources/sageTest.tsv | 0
.../src/test/resources/same.tsv | 0
.../src/test/resources/sample.tsv | 0
.../src/test/resources/single01.bam | Bin
.../src/test/resources/single01.bam.bai | Bin
.../src/test/resources/single01.fq | 0
.../src/test/resources/single01.sam | 0
.../src/test/resources/single02.bam | Bin
.../src/test/resources/single02.bam.bai | Bin
.../src/test/resources/single02.sam | 0
.../src/test/resources/single03.bam | Bin
.../src/test/resources/single03.bam.bai | Bin
.../src/test/resources/single03.sam | 0
.../src/test/resources/single04.bam | Bin
.../src/test/resources/single04.bam.bai | Bin
.../src/test/resources/single04.sam | 0
.../src/test/resources/single05.bam | Bin
.../src/test/resources/single05.bam.bai | Bin
.../src/test/resources/single05.sam | 0
.../src/test/resources/tagCount.tsv | 0
.../src/test/resources/test.summary.json | 0
.../src/test/resources/unvep_online.vcf.gz | Bin
.../src/test/resources/unvep_online.vcf.gz.tbi | Bin
.../src/test/resources/unvepped.vcf | 0
.../src/test/resources/unvepped.vcf.gz | Bin
.../src/test/resources/unvepped.vcf.gz.tbi | Bin
68 files changed, 0 insertions(+), 0 deletions(-)
rename public/{biopet-framework => biopet-tools}/src/test/resources/README.txt (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/VCFv3.vcf (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/VEP_oneline.vcf (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/VEP_oneline.vcf.gz (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/VEP_oneline.vcf.gz.tbi (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/chrQ.vcf (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/chrQ.vcf.gz (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/chrQ.vcf.gz.tbi (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/chrQ2.vcf (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/chrQ2.vcf.gz (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/chrQ2.vcf.gz.tbi (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/chrQ_allN.fa (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/chrQ_allN.fa.fai (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/fake_chrQ.dict (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/fake_chrQ.fa (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/fake_chrQ.fa.fai (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/flagstat_crossreport.txt (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/flagstat_crosstrue.txt (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/flagstat_report.txt (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/flagstat_summary.txt (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/mini.transcriptome.fa (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/no_sample.tsv (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/number.tsv (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/paired01.bam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/paired01.bam.bai (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/paired01.pileup (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/paired01.sam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/paired01a.fq (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/paired01b.fq (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/paired02.bam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/paired02.bam.bai (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/paired02.sam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/paired03.bam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/paired03.bam.bai (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/paired03.sam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/rrna01.bed (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/rrna01.gtf (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/rrna01.refFlat (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/rrna02.bed (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/sageAllGenesTest.tsv (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/sageNoAntiTest.tsv (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/sageNoTagsTest.tsv (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/sageTest.tsv (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/same.tsv (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/sample.tsv (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single01.bam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single01.bam.bai (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single01.fq (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single01.sam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single02.bam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single02.bam.bai (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single02.sam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single03.bam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single03.bam.bai (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single03.sam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single04.bam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single04.bam.bai (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single04.sam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single05.bam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single05.bam.bai (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/single05.sam (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/tagCount.tsv (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/test.summary.json (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/unvep_online.vcf.gz (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/unvep_online.vcf.gz.tbi (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/unvepped.vcf (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/unvepped.vcf.gz (100%)
rename public/{biopet-framework => biopet-tools}/src/test/resources/unvepped.vcf.gz.tbi (100%)
diff --git a/public/biopet-framework/src/test/resources/README.txt b/public/biopet-tools/src/test/resources/README.txt
similarity index 100%
rename from public/biopet-framework/src/test/resources/README.txt
rename to public/biopet-tools/src/test/resources/README.txt
diff --git a/public/biopet-framework/src/test/resources/VCFv3.vcf b/public/biopet-tools/src/test/resources/VCFv3.vcf
similarity index 100%
rename from public/biopet-framework/src/test/resources/VCFv3.vcf
rename to public/biopet-tools/src/test/resources/VCFv3.vcf
diff --git a/public/biopet-framework/src/test/resources/VEP_oneline.vcf b/public/biopet-tools/src/test/resources/VEP_oneline.vcf
similarity index 100%
rename from public/biopet-framework/src/test/resources/VEP_oneline.vcf
rename to public/biopet-tools/src/test/resources/VEP_oneline.vcf
diff --git a/public/biopet-framework/src/test/resources/VEP_oneline.vcf.gz b/public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz
similarity index 100%
rename from public/biopet-framework/src/test/resources/VEP_oneline.vcf.gz
rename to public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz
diff --git a/public/biopet-framework/src/test/resources/VEP_oneline.vcf.gz.tbi b/public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz.tbi
similarity index 100%
rename from public/biopet-framework/src/test/resources/VEP_oneline.vcf.gz.tbi
rename to public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz.tbi
diff --git a/public/biopet-framework/src/test/resources/chrQ.vcf b/public/biopet-tools/src/test/resources/chrQ.vcf
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ.vcf
rename to public/biopet-tools/src/test/resources/chrQ.vcf
diff --git a/public/biopet-framework/src/test/resources/chrQ.vcf.gz b/public/biopet-tools/src/test/resources/chrQ.vcf.gz
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ.vcf.gz
rename to public/biopet-tools/src/test/resources/chrQ.vcf.gz
diff --git a/public/biopet-framework/src/test/resources/chrQ.vcf.gz.tbi b/public/biopet-tools/src/test/resources/chrQ.vcf.gz.tbi
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ.vcf.gz.tbi
rename to public/biopet-tools/src/test/resources/chrQ.vcf.gz.tbi
diff --git a/public/biopet-framework/src/test/resources/chrQ2.vcf b/public/biopet-tools/src/test/resources/chrQ2.vcf
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ2.vcf
rename to public/biopet-tools/src/test/resources/chrQ2.vcf
diff --git a/public/biopet-framework/src/test/resources/chrQ2.vcf.gz b/public/biopet-tools/src/test/resources/chrQ2.vcf.gz
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ2.vcf.gz
rename to public/biopet-tools/src/test/resources/chrQ2.vcf.gz
diff --git a/public/biopet-framework/src/test/resources/chrQ2.vcf.gz.tbi b/public/biopet-tools/src/test/resources/chrQ2.vcf.gz.tbi
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ2.vcf.gz.tbi
rename to public/biopet-tools/src/test/resources/chrQ2.vcf.gz.tbi
diff --git a/public/biopet-framework/src/test/resources/chrQ_allN.fa b/public/biopet-tools/src/test/resources/chrQ_allN.fa
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ_allN.fa
rename to public/biopet-tools/src/test/resources/chrQ_allN.fa
diff --git a/public/biopet-framework/src/test/resources/chrQ_allN.fa.fai b/public/biopet-tools/src/test/resources/chrQ_allN.fa.fai
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ_allN.fa.fai
rename to public/biopet-tools/src/test/resources/chrQ_allN.fa.fai
diff --git a/public/biopet-framework/src/test/resources/fake_chrQ.dict b/public/biopet-tools/src/test/resources/fake_chrQ.dict
similarity index 100%
rename from public/biopet-framework/src/test/resources/fake_chrQ.dict
rename to public/biopet-tools/src/test/resources/fake_chrQ.dict
diff --git a/public/biopet-framework/src/test/resources/fake_chrQ.fa b/public/biopet-tools/src/test/resources/fake_chrQ.fa
similarity index 100%
rename from public/biopet-framework/src/test/resources/fake_chrQ.fa
rename to public/biopet-tools/src/test/resources/fake_chrQ.fa
diff --git a/public/biopet-framework/src/test/resources/fake_chrQ.fa.fai b/public/biopet-tools/src/test/resources/fake_chrQ.fa.fai
similarity index 100%
rename from public/biopet-framework/src/test/resources/fake_chrQ.fa.fai
rename to public/biopet-tools/src/test/resources/fake_chrQ.fa.fai
diff --git a/public/biopet-framework/src/test/resources/flagstat_crossreport.txt b/public/biopet-tools/src/test/resources/flagstat_crossreport.txt
similarity index 100%
rename from public/biopet-framework/src/test/resources/flagstat_crossreport.txt
rename to public/biopet-tools/src/test/resources/flagstat_crossreport.txt
diff --git a/public/biopet-framework/src/test/resources/flagstat_crosstrue.txt b/public/biopet-tools/src/test/resources/flagstat_crosstrue.txt
similarity index 100%
rename from public/biopet-framework/src/test/resources/flagstat_crosstrue.txt
rename to public/biopet-tools/src/test/resources/flagstat_crosstrue.txt
diff --git a/public/biopet-framework/src/test/resources/flagstat_report.txt b/public/biopet-tools/src/test/resources/flagstat_report.txt
similarity index 100%
rename from public/biopet-framework/src/test/resources/flagstat_report.txt
rename to public/biopet-tools/src/test/resources/flagstat_report.txt
diff --git a/public/biopet-framework/src/test/resources/flagstat_summary.txt b/public/biopet-tools/src/test/resources/flagstat_summary.txt
similarity index 100%
rename from public/biopet-framework/src/test/resources/flagstat_summary.txt
rename to public/biopet-tools/src/test/resources/flagstat_summary.txt
diff --git a/public/biopet-framework/src/test/resources/mini.transcriptome.fa b/public/biopet-tools/src/test/resources/mini.transcriptome.fa
similarity index 100%
rename from public/biopet-framework/src/test/resources/mini.transcriptome.fa
rename to public/biopet-tools/src/test/resources/mini.transcriptome.fa
diff --git a/public/biopet-framework/src/test/resources/no_sample.tsv b/public/biopet-tools/src/test/resources/no_sample.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/no_sample.tsv
rename to public/biopet-tools/src/test/resources/no_sample.tsv
diff --git a/public/biopet-framework/src/test/resources/number.tsv b/public/biopet-tools/src/test/resources/number.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/number.tsv
rename to public/biopet-tools/src/test/resources/number.tsv
diff --git a/public/biopet-framework/src/test/resources/paired01.bam b/public/biopet-tools/src/test/resources/paired01.bam
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired01.bam
rename to public/biopet-tools/src/test/resources/paired01.bam
diff --git a/public/biopet-framework/src/test/resources/paired01.bam.bai b/public/biopet-tools/src/test/resources/paired01.bam.bai
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired01.bam.bai
rename to public/biopet-tools/src/test/resources/paired01.bam.bai
diff --git a/public/biopet-framework/src/test/resources/paired01.pileup b/public/biopet-tools/src/test/resources/paired01.pileup
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired01.pileup
rename to public/biopet-tools/src/test/resources/paired01.pileup
diff --git a/public/biopet-framework/src/test/resources/paired01.sam b/public/biopet-tools/src/test/resources/paired01.sam
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired01.sam
rename to public/biopet-tools/src/test/resources/paired01.sam
diff --git a/public/biopet-framework/src/test/resources/paired01a.fq b/public/biopet-tools/src/test/resources/paired01a.fq
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired01a.fq
rename to public/biopet-tools/src/test/resources/paired01a.fq
diff --git a/public/biopet-framework/src/test/resources/paired01b.fq b/public/biopet-tools/src/test/resources/paired01b.fq
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired01b.fq
rename to public/biopet-tools/src/test/resources/paired01b.fq
diff --git a/public/biopet-framework/src/test/resources/paired02.bam b/public/biopet-tools/src/test/resources/paired02.bam
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired02.bam
rename to public/biopet-tools/src/test/resources/paired02.bam
diff --git a/public/biopet-framework/src/test/resources/paired02.bam.bai b/public/biopet-tools/src/test/resources/paired02.bam.bai
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired02.bam.bai
rename to public/biopet-tools/src/test/resources/paired02.bam.bai
diff --git a/public/biopet-framework/src/test/resources/paired02.sam b/public/biopet-tools/src/test/resources/paired02.sam
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired02.sam
rename to public/biopet-tools/src/test/resources/paired02.sam
diff --git a/public/biopet-framework/src/test/resources/paired03.bam b/public/biopet-tools/src/test/resources/paired03.bam
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired03.bam
rename to public/biopet-tools/src/test/resources/paired03.bam
diff --git a/public/biopet-framework/src/test/resources/paired03.bam.bai b/public/biopet-tools/src/test/resources/paired03.bam.bai
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired03.bam.bai
rename to public/biopet-tools/src/test/resources/paired03.bam.bai
diff --git a/public/biopet-framework/src/test/resources/paired03.sam b/public/biopet-tools/src/test/resources/paired03.sam
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired03.sam
rename to public/biopet-tools/src/test/resources/paired03.sam
diff --git a/public/biopet-framework/src/test/resources/rrna01.bed b/public/biopet-tools/src/test/resources/rrna01.bed
similarity index 100%
rename from public/biopet-framework/src/test/resources/rrna01.bed
rename to public/biopet-tools/src/test/resources/rrna01.bed
diff --git a/public/biopet-framework/src/test/resources/rrna01.gtf b/public/biopet-tools/src/test/resources/rrna01.gtf
similarity index 100%
rename from public/biopet-framework/src/test/resources/rrna01.gtf
rename to public/biopet-tools/src/test/resources/rrna01.gtf
diff --git a/public/biopet-framework/src/test/resources/rrna01.refFlat b/public/biopet-tools/src/test/resources/rrna01.refFlat
similarity index 100%
rename from public/biopet-framework/src/test/resources/rrna01.refFlat
rename to public/biopet-tools/src/test/resources/rrna01.refFlat
diff --git a/public/biopet-framework/src/test/resources/rrna02.bed b/public/biopet-tools/src/test/resources/rrna02.bed
similarity index 100%
rename from public/biopet-framework/src/test/resources/rrna02.bed
rename to public/biopet-tools/src/test/resources/rrna02.bed
diff --git a/public/biopet-framework/src/test/resources/sageAllGenesTest.tsv b/public/biopet-tools/src/test/resources/sageAllGenesTest.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/sageAllGenesTest.tsv
rename to public/biopet-tools/src/test/resources/sageAllGenesTest.tsv
diff --git a/public/biopet-framework/src/test/resources/sageNoAntiTest.tsv b/public/biopet-tools/src/test/resources/sageNoAntiTest.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/sageNoAntiTest.tsv
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