diff --git a/public/biopet-framework/src/test/resources/README.txt b/public/biopet-tools/src/test/resources/README.txt
similarity index 100%
rename from public/biopet-framework/src/test/resources/README.txt
rename to public/biopet-tools/src/test/resources/README.txt
diff --git a/public/biopet-framework/src/test/resources/VCFv3.vcf b/public/biopet-tools/src/test/resources/VCFv3.vcf
similarity index 100%
rename from public/biopet-framework/src/test/resources/VCFv3.vcf
rename to public/biopet-tools/src/test/resources/VCFv3.vcf
diff --git a/public/biopet-framework/src/test/resources/VEP_oneline.vcf b/public/biopet-tools/src/test/resources/VEP_oneline.vcf
similarity index 100%
rename from public/biopet-framework/src/test/resources/VEP_oneline.vcf
rename to public/biopet-tools/src/test/resources/VEP_oneline.vcf
diff --git a/public/biopet-framework/src/test/resources/VEP_oneline.vcf.gz b/public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz
similarity index 100%
rename from public/biopet-framework/src/test/resources/VEP_oneline.vcf.gz
rename to public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz
diff --git a/public/biopet-framework/src/test/resources/VEP_oneline.vcf.gz.tbi b/public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz.tbi
similarity index 100%
rename from public/biopet-framework/src/test/resources/VEP_oneline.vcf.gz.tbi
rename to public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz.tbi
diff --git a/public/biopet-framework/src/test/resources/chrQ.vcf b/public/biopet-tools/src/test/resources/chrQ.vcf
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ.vcf
rename to public/biopet-tools/src/test/resources/chrQ.vcf
diff --git a/public/biopet-framework/src/test/resources/chrQ.vcf.gz b/public/biopet-tools/src/test/resources/chrQ.vcf.gz
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ.vcf.gz
rename to public/biopet-tools/src/test/resources/chrQ.vcf.gz
diff --git a/public/biopet-framework/src/test/resources/chrQ.vcf.gz.tbi b/public/biopet-tools/src/test/resources/chrQ.vcf.gz.tbi
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ.vcf.gz.tbi
rename to public/biopet-tools/src/test/resources/chrQ.vcf.gz.tbi
diff --git a/public/biopet-framework/src/test/resources/chrQ2.vcf b/public/biopet-tools/src/test/resources/chrQ2.vcf
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ2.vcf
rename to public/biopet-tools/src/test/resources/chrQ2.vcf
diff --git a/public/biopet-framework/src/test/resources/chrQ2.vcf.gz b/public/biopet-tools/src/test/resources/chrQ2.vcf.gz
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ2.vcf.gz
rename to public/biopet-tools/src/test/resources/chrQ2.vcf.gz
diff --git a/public/biopet-framework/src/test/resources/chrQ2.vcf.gz.tbi b/public/biopet-tools/src/test/resources/chrQ2.vcf.gz.tbi
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ2.vcf.gz.tbi
rename to public/biopet-tools/src/test/resources/chrQ2.vcf.gz.tbi
diff --git a/public/biopet-framework/src/test/resources/chrQ_allN.fa b/public/biopet-tools/src/test/resources/chrQ_allN.fa
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ_allN.fa
rename to public/biopet-tools/src/test/resources/chrQ_allN.fa
diff --git a/public/biopet-framework/src/test/resources/chrQ_allN.fa.fai b/public/biopet-tools/src/test/resources/chrQ_allN.fa.fai
similarity index 100%
rename from public/biopet-framework/src/test/resources/chrQ_allN.fa.fai
rename to public/biopet-tools/src/test/resources/chrQ_allN.fa.fai
diff --git a/public/biopet-framework/src/test/resources/fake_chrQ.dict b/public/biopet-tools/src/test/resources/fake_chrQ.dict
similarity index 100%
rename from public/biopet-framework/src/test/resources/fake_chrQ.dict
rename to public/biopet-tools/src/test/resources/fake_chrQ.dict
diff --git a/public/biopet-framework/src/test/resources/fake_chrQ.fa b/public/biopet-tools/src/test/resources/fake_chrQ.fa
similarity index 100%
rename from public/biopet-framework/src/test/resources/fake_chrQ.fa
rename to public/biopet-tools/src/test/resources/fake_chrQ.fa
diff --git a/public/biopet-framework/src/test/resources/fake_chrQ.fa.fai b/public/biopet-tools/src/test/resources/fake_chrQ.fa.fai
similarity index 100%
rename from public/biopet-framework/src/test/resources/fake_chrQ.fa.fai
rename to public/biopet-tools/src/test/resources/fake_chrQ.fa.fai
diff --git a/public/biopet-framework/src/test/resources/flagstat_crossreport.txt b/public/biopet-tools/src/test/resources/flagstat_crossreport.txt
similarity index 100%
rename from public/biopet-framework/src/test/resources/flagstat_crossreport.txt
rename to public/biopet-tools/src/test/resources/flagstat_crossreport.txt
diff --git a/public/biopet-framework/src/test/resources/flagstat_crosstrue.txt b/public/biopet-tools/src/test/resources/flagstat_crosstrue.txt
similarity index 100%
rename from public/biopet-framework/src/test/resources/flagstat_crosstrue.txt
rename to public/biopet-tools/src/test/resources/flagstat_crosstrue.txt
diff --git a/public/biopet-framework/src/test/resources/flagstat_report.txt b/public/biopet-tools/src/test/resources/flagstat_report.txt
similarity index 100%
rename from public/biopet-framework/src/test/resources/flagstat_report.txt
rename to public/biopet-tools/src/test/resources/flagstat_report.txt
diff --git a/public/biopet-framework/src/test/resources/flagstat_summary.txt b/public/biopet-tools/src/test/resources/flagstat_summary.txt
similarity index 100%
rename from public/biopet-framework/src/test/resources/flagstat_summary.txt
rename to public/biopet-tools/src/test/resources/flagstat_summary.txt
diff --git a/public/biopet-framework/src/test/resources/mini.transcriptome.fa b/public/biopet-tools/src/test/resources/mini.transcriptome.fa
similarity index 100%
rename from public/biopet-framework/src/test/resources/mini.transcriptome.fa
rename to public/biopet-tools/src/test/resources/mini.transcriptome.fa
diff --git a/public/biopet-framework/src/test/resources/no_sample.tsv b/public/biopet-tools/src/test/resources/no_sample.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/no_sample.tsv
rename to public/biopet-tools/src/test/resources/no_sample.tsv
diff --git a/public/biopet-framework/src/test/resources/number.tsv b/public/biopet-tools/src/test/resources/number.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/number.tsv
rename to public/biopet-tools/src/test/resources/number.tsv
diff --git a/public/biopet-framework/src/test/resources/paired01.bam b/public/biopet-tools/src/test/resources/paired01.bam
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired01.bam
rename to public/biopet-tools/src/test/resources/paired01.bam
diff --git a/public/biopet-framework/src/test/resources/paired01.bam.bai b/public/biopet-tools/src/test/resources/paired01.bam.bai
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired01.bam.bai
rename to public/biopet-tools/src/test/resources/paired01.bam.bai
diff --git a/public/biopet-framework/src/test/resources/paired01.pileup b/public/biopet-tools/src/test/resources/paired01.pileup
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired01.pileup
rename to public/biopet-tools/src/test/resources/paired01.pileup
diff --git a/public/biopet-framework/src/test/resources/paired01.sam b/public/biopet-tools/src/test/resources/paired01.sam
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired01.sam
rename to public/biopet-tools/src/test/resources/paired01.sam
diff --git a/public/biopet-framework/src/test/resources/paired01a.fq b/public/biopet-tools/src/test/resources/paired01a.fq
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired01a.fq
rename to public/biopet-tools/src/test/resources/paired01a.fq
diff --git a/public/biopet-framework/src/test/resources/paired01b.fq b/public/biopet-tools/src/test/resources/paired01b.fq
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired01b.fq
rename to public/biopet-tools/src/test/resources/paired01b.fq
diff --git a/public/biopet-framework/src/test/resources/paired02.bam b/public/biopet-tools/src/test/resources/paired02.bam
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired02.bam
rename to public/biopet-tools/src/test/resources/paired02.bam
diff --git a/public/biopet-framework/src/test/resources/paired02.bam.bai b/public/biopet-tools/src/test/resources/paired02.bam.bai
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired02.bam.bai
rename to public/biopet-tools/src/test/resources/paired02.bam.bai
diff --git a/public/biopet-framework/src/test/resources/paired02.sam b/public/biopet-tools/src/test/resources/paired02.sam
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired02.sam
rename to public/biopet-tools/src/test/resources/paired02.sam
diff --git a/public/biopet-framework/src/test/resources/paired03.bam b/public/biopet-tools/src/test/resources/paired03.bam
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired03.bam
rename to public/biopet-tools/src/test/resources/paired03.bam
diff --git a/public/biopet-framework/src/test/resources/paired03.bam.bai b/public/biopet-tools/src/test/resources/paired03.bam.bai
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired03.bam.bai
rename to public/biopet-tools/src/test/resources/paired03.bam.bai
diff --git a/public/biopet-framework/src/test/resources/paired03.sam b/public/biopet-tools/src/test/resources/paired03.sam
similarity index 100%
rename from public/biopet-framework/src/test/resources/paired03.sam
rename to public/biopet-tools/src/test/resources/paired03.sam
diff --git a/public/biopet-framework/src/test/resources/rrna01.bed b/public/biopet-tools/src/test/resources/rrna01.bed
similarity index 100%
rename from public/biopet-framework/src/test/resources/rrna01.bed
rename to public/biopet-tools/src/test/resources/rrna01.bed
diff --git a/public/biopet-framework/src/test/resources/rrna01.gtf b/public/biopet-tools/src/test/resources/rrna01.gtf
similarity index 100%
rename from public/biopet-framework/src/test/resources/rrna01.gtf
rename to public/biopet-tools/src/test/resources/rrna01.gtf
diff --git a/public/biopet-framework/src/test/resources/rrna01.refFlat b/public/biopet-tools/src/test/resources/rrna01.refFlat
similarity index 100%
rename from public/biopet-framework/src/test/resources/rrna01.refFlat
rename to public/biopet-tools/src/test/resources/rrna01.refFlat
diff --git a/public/biopet-framework/src/test/resources/rrna02.bed b/public/biopet-tools/src/test/resources/rrna02.bed
similarity index 100%
rename from public/biopet-framework/src/test/resources/rrna02.bed
rename to public/biopet-tools/src/test/resources/rrna02.bed
diff --git a/public/biopet-framework/src/test/resources/sageAllGenesTest.tsv b/public/biopet-tools/src/test/resources/sageAllGenesTest.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/sageAllGenesTest.tsv
rename to public/biopet-tools/src/test/resources/sageAllGenesTest.tsv
diff --git a/public/biopet-framework/src/test/resources/sageNoAntiTest.tsv b/public/biopet-tools/src/test/resources/sageNoAntiTest.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/sageNoAntiTest.tsv
rename to public/biopet-tools/src/test/resources/sageNoAntiTest.tsv
diff --git a/public/biopet-framework/src/test/resources/sageNoTagsTest.tsv b/public/biopet-tools/src/test/resources/sageNoTagsTest.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/sageNoTagsTest.tsv
rename to public/biopet-tools/src/test/resources/sageNoTagsTest.tsv
diff --git a/public/biopet-framework/src/test/resources/sageTest.tsv b/public/biopet-tools/src/test/resources/sageTest.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/sageTest.tsv
rename to public/biopet-tools/src/test/resources/sageTest.tsv
diff --git a/public/biopet-framework/src/test/resources/same.tsv b/public/biopet-tools/src/test/resources/same.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/same.tsv
rename to public/biopet-tools/src/test/resources/same.tsv
diff --git a/public/biopet-framework/src/test/resources/sample.tsv b/public/biopet-tools/src/test/resources/sample.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/sample.tsv
rename to public/biopet-tools/src/test/resources/sample.tsv
diff --git a/public/biopet-framework/src/test/resources/single01.bam b/public/biopet-tools/src/test/resources/single01.bam
similarity index 100%
rename from public/biopet-framework/src/test/resources/single01.bam
rename to public/biopet-tools/src/test/resources/single01.bam
diff --git a/public/biopet-framework/src/test/resources/single01.bam.bai b/public/biopet-tools/src/test/resources/single01.bam.bai
similarity index 100%
rename from public/biopet-framework/src/test/resources/single01.bam.bai
rename to public/biopet-tools/src/test/resources/single01.bam.bai
diff --git a/public/biopet-framework/src/test/resources/single01.fq b/public/biopet-tools/src/test/resources/single01.fq
similarity index 100%
rename from public/biopet-framework/src/test/resources/single01.fq
rename to public/biopet-tools/src/test/resources/single01.fq
diff --git a/public/biopet-framework/src/test/resources/single01.sam b/public/biopet-tools/src/test/resources/single01.sam
similarity index 100%
rename from public/biopet-framework/src/test/resources/single01.sam
rename to public/biopet-tools/src/test/resources/single01.sam
diff --git a/public/biopet-framework/src/test/resources/single02.bam b/public/biopet-tools/src/test/resources/single02.bam
similarity index 100%
rename from public/biopet-framework/src/test/resources/single02.bam
rename to public/biopet-tools/src/test/resources/single02.bam
diff --git a/public/biopet-framework/src/test/resources/single02.bam.bai b/public/biopet-tools/src/test/resources/single02.bam.bai
similarity index 100%
rename from public/biopet-framework/src/test/resources/single02.bam.bai
rename to public/biopet-tools/src/test/resources/single02.bam.bai
diff --git a/public/biopet-framework/src/test/resources/single02.sam b/public/biopet-tools/src/test/resources/single02.sam
similarity index 100%
rename from public/biopet-framework/src/test/resources/single02.sam
rename to public/biopet-tools/src/test/resources/single02.sam
diff --git a/public/biopet-framework/src/test/resources/single03.bam b/public/biopet-tools/src/test/resources/single03.bam
similarity index 100%
rename from public/biopet-framework/src/test/resources/single03.bam
rename to public/biopet-tools/src/test/resources/single03.bam
diff --git a/public/biopet-framework/src/test/resources/single03.bam.bai b/public/biopet-tools/src/test/resources/single03.bam.bai
similarity index 100%
rename from public/biopet-framework/src/test/resources/single03.bam.bai
rename to public/biopet-tools/src/test/resources/single03.bam.bai
diff --git a/public/biopet-framework/src/test/resources/single03.sam b/public/biopet-tools/src/test/resources/single03.sam
similarity index 100%
rename from public/biopet-framework/src/test/resources/single03.sam
rename to public/biopet-tools/src/test/resources/single03.sam
diff --git a/public/biopet-framework/src/test/resources/single04.bam b/public/biopet-tools/src/test/resources/single04.bam
similarity index 100%
rename from public/biopet-framework/src/test/resources/single04.bam
rename to public/biopet-tools/src/test/resources/single04.bam
diff --git a/public/biopet-framework/src/test/resources/single04.bam.bai b/public/biopet-tools/src/test/resources/single04.bam.bai
similarity index 100%
rename from public/biopet-framework/src/test/resources/single04.bam.bai
rename to public/biopet-tools/src/test/resources/single04.bam.bai
diff --git a/public/biopet-framework/src/test/resources/single04.sam b/public/biopet-tools/src/test/resources/single04.sam
similarity index 100%
rename from public/biopet-framework/src/test/resources/single04.sam
rename to public/biopet-tools/src/test/resources/single04.sam
diff --git a/public/biopet-framework/src/test/resources/single05.bam b/public/biopet-tools/src/test/resources/single05.bam
similarity index 100%
rename from public/biopet-framework/src/test/resources/single05.bam
rename to public/biopet-tools/src/test/resources/single05.bam
diff --git a/public/biopet-framework/src/test/resources/single05.bam.bai b/public/biopet-tools/src/test/resources/single05.bam.bai
similarity index 100%
rename from public/biopet-framework/src/test/resources/single05.bam.bai
rename to public/biopet-tools/src/test/resources/single05.bam.bai
diff --git a/public/biopet-framework/src/test/resources/single05.sam b/public/biopet-tools/src/test/resources/single05.sam
similarity index 100%
rename from public/biopet-framework/src/test/resources/single05.sam
rename to public/biopet-tools/src/test/resources/single05.sam
diff --git a/public/biopet-framework/src/test/resources/tagCount.tsv b/public/biopet-tools/src/test/resources/tagCount.tsv
similarity index 100%
rename from public/biopet-framework/src/test/resources/tagCount.tsv
rename to public/biopet-tools/src/test/resources/tagCount.tsv
diff --git a/public/biopet-framework/src/test/resources/test.summary.json b/public/biopet-tools/src/test/resources/test.summary.json
similarity index 100%
rename from public/biopet-framework/src/test/resources/test.summary.json
rename to public/biopet-tools/src/test/resources/test.summary.json
diff --git a/public/biopet-framework/src/test/resources/unvep_online.vcf.gz b/public/biopet-tools/src/test/resources/unvep_online.vcf.gz
similarity index 100%
rename from public/biopet-framework/src/test/resources/unvep_online.vcf.gz
rename to public/biopet-tools/src/test/resources/unvep_online.vcf.gz
diff --git a/public/biopet-framework/src/test/resources/unvep_online.vcf.gz.tbi b/public/biopet-tools/src/test/resources/unvep_online.vcf.gz.tbi
similarity index 100%
rename from public/biopet-framework/src/test/resources/unvep_online.vcf.gz.tbi
rename to public/biopet-tools/src/test/resources/unvep_online.vcf.gz.tbi
diff --git a/public/biopet-framework/src/test/resources/unvepped.vcf b/public/biopet-tools/src/test/resources/unvepped.vcf
similarity index 100%
rename from public/biopet-framework/src/test/resources/unvepped.vcf
rename to public/biopet-tools/src/test/resources/unvepped.vcf
diff --git a/public/biopet-framework/src/test/resources/unvepped.vcf.gz b/public/biopet-tools/src/test/resources/unvepped.vcf.gz
similarity index 100%
rename from public/biopet-framework/src/test/resources/unvepped.vcf.gz
rename to public/biopet-tools/src/test/resources/unvepped.vcf.gz
diff --git a/public/biopet-framework/src/test/resources/unvepped.vcf.gz.tbi b/public/biopet-tools/src/test/resources/unvepped.vcf.gz.tbi
similarity index 100%
rename from public/biopet-framework/src/test/resources/unvepped.vcf.gz.tbi
rename to public/biopet-tools/src/test/resources/unvepped.vcf.gz.tbi