Commit 7fc8249b authored by Pappas's avatar Pappas
Browse files

Added centrifuge to docs

parent 8beccf35
......@@ -22,7 +22,8 @@ This pipeline is used to analyse a group of samples. This pipeline only accepts
| Key | Type | default | Function |
| --- | ---- | ------- | -------- |
| gears_use_kraken | Boolean | true | Run fastq file with kraken |
| gears_use_centrifuge | Boolean | true | Run fastq file with centrifuge |
| gears_use_kraken | Boolean | false | Run fastq file with kraken |
| gears_use_qiime_closed | Boolean | false | Run fastq files with qiime with the closed reference module |
| gears_use_qiime_open | Boolean | false | Run fastq files with qiime with the open reference module |
| gears_use_qiime_rtax | Boolean | false | Run fastq files with qiime with the rtax module |
......
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