Commit 7b7dbee8 authored by Peter van 't Hof's avatar Peter van 't Hof

Removing non merge variantcallers from prio list

parent 13fe251d
......@@ -91,7 +91,7 @@ class ShivaVariantcalling(val root: Configurable) extends QScript
cv.out = finalFile
cv.setKey = Some("VariantCaller")
cv.genotypemergeoption = Some("PRIORITIZE")
cv.rod_priority_list = Some(callers.map(_.name).mkString(","))
cv.rod_priority_list = Some(callers.filter(_.mergeVcfResults).map(_.name).mkString(","))
for (caller <- callers) {
caller.inputBams = inputBams
caller.namePrefix = namePrefix
......
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