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biopet.biopet
Commits
7b626832
Commit
7b626832
authored
Aug 26, 2014
by
Peter van 't Hof
Browse files
Added skipMarkduplicates on dedup step
parent
c8ffb442
Changes
1
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biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/sage/Sage.scala
View file @
7b626832
...
...
@@ -95,6 +95,7 @@ class Sage(val root: Configurable) extends QScript with MultiSampleQScript {
val
mapping
=
new
Mapping
(
this
)
mapping
.
skipFlexiprep
=
true
mapping
.
skipMarkduplicates
=
true
mapping
.
input_R1
=
prefixFastq
.
output
mapping
.
RGLB
=
runConfig
(
"ID"
).
toString
mapping
.
RGSM
=
sampleConfig
(
"ID"
).
toString
...
...
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