Commit 7adac0dd authored by npappas's avatar npappas

Fix centriguge typo in GearsReport

parent 8f638fe4
......@@ -51,7 +51,7 @@ object GearsReport extends MultisampleReportBuilder {
val qiimeClosesOtuTable = summary.getFile(runId, "gears", key = "qiime_closed_otu_table")
val qiimeOpenOtuTable = summary.getFile(runId, "gears", key = "qiime_open_otu_table")
val centrifugePage = (if (centrifugeExecuted) Some("Centriguge analysis" -> Future.successful(ReportPage(List("Non-unique" ->
val centrifugePage = (if (centrifugeExecuted) Some("Centrifuge analysis" -> Future.successful(ReportPage(List("Non-unique" ->
Future.successful(ReportPage(List(), List("All mappings" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp",
Map("summaryStatsTag" -> "centrifuge_report")
)), Map()))), List(
......@@ -99,7 +99,7 @@ object GearsReport extends MultisampleReportBuilder {
val qiimeClosesOtuTable = Await.result(summary.getFile(runId, "gearssingle", NoModule, sampleId, NoLibrary, "qiime_closed_otu_table"), Duration.Inf)
val qiimeOpenOtuTable = Await.result(summary.getFile(runId, "gearssingle", NoModule, sampleId, NoLibrary, "qiime_open_otu_table"), Duration.Inf)
ReportPage((if (centrifugeExecuted) List("Centriguge analysis" -> Future.successful(ReportPage(List(
ReportPage((if (centrifugeExecuted) List("Centrifuge analysis" -> Future.successful(ReportPage(List(
"Non-unique" -> Future.successful(ReportPage(List(), List("All mappings" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp",
Map("summaryStatsTag" -> "centrifuge_report")
)), Map()))), List(
......@@ -136,7 +136,7 @@ object GearsReport extends MultisampleReportBuilder {
ReportPage(
(if (flexiprepExecuted) List("QC" -> FlexiprepReport.flexiprepPage) else Nil
) ::: (if (centrifugeExecuted) List("Centriguge analysis" -> Future.successful(ReportPage(List(
) ::: (if (centrifugeExecuted) List("Centrifuge analysis" -> Future.successful(ReportPage(List(
"Non-unique" -> Future.successful(ReportPage(List(), List("All mappings" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp",
Map("summaryStatsTag" -> "centrifuge_report")
)), Map()))), List(
......
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