From 7a63ece818dac8ec5838c1dc271b54a5f766b1ef Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 4 Aug 2014 19:07:41 +0200
Subject: [PATCH] Fix end lines on output buffers
---
.../lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
index da076d384..373b8cc01 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
@@ -88,7 +88,7 @@ trait BiopetCommandLineFunctionTrait extends CommandLineFunction with Configurab
def outputLog = "Version command: \n" + versionCommand +
"\n output log: \n stdout: \n" + stdout.toString +
"\n stderr: \n" + stderr.toString
- val process = Process(versionCommand).run(ProcessLogger(stdout append _, stderr append _))
+ val process = Process(versionCommand).run(ProcessLogger(stdout append _+"\n", stderr append _+"\n"))
if (!versionExitcode.contains(process.exitValue)) {
logger.warn("getVersion give exit code " + process.exitValue + ", version not found \n" + outputLog)
return "N/A"
--
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