Commit 79b42eea authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixing bug with freebayes

parent 33d98997
...@@ -30,7 +30,7 @@ class Bgzip(val root: Configurable) extends BiopetCommandLineFunction { ...@@ -30,7 +30,7 @@ class Bgzip(val root: Configurable) extends BiopetCommandLineFunction {
var output: File = null var output: File = null
var f: Boolean = config("f", default = false) var f: Boolean = config("f", default = false)
executable = config("exe", default = "bgzip") executable = config("exe", default = "bgzip", freeVar = false)
def cmdLine = required(executable) + def cmdLine = required(executable) +
conditional(f, "-f") + conditional(f, "-f") +
......
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