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biopet.biopet
Commits
79b42eea
Commit
79b42eea
authored
Aug 11, 2016
by
Peter van 't Hof
Browse files
Fixing bug with freebayes
parent
33d98997
Changes
1
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Inline
Side-by-side
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Bgzip.scala
View file @
79b42eea
...
...
@@ -30,7 +30,7 @@ class Bgzip(val root: Configurable) extends BiopetCommandLineFunction {
var
output
:
File
=
null
var
f
:
Boolean
=
config
(
"f"
,
default
=
false
)
executable
=
config
(
"exe"
,
default
=
"bgzip"
)
executable
=
config
(
"exe"
,
default
=
"bgzip"
,
freeVar
=
false
)
def
cmdLine
=
required
(
executable
)
+
conditional
(
f
,
"-f"
)
+
...
...
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