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biopet.biopet
Commits
78669bf0
Commit
78669bf0
authored
Dec 18, 2016
by
Peter van 't Hof
Browse files
Changed default
parent
8492af35
Changes
1
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/template/Shiva.scala
View file @
78669bf0
...
...
@@ -21,7 +21,7 @@ object Shiva extends TemplateTool {
map
++
Reference
.
askReference
++
Map
(
"variantcallers"
->
Question
.
list
(
"Variantcallers"
,
posibleValues
=
possibleVariantcallers
,
default
=
Some
(
List
(
"unifiedgenotyper"
,
"haplotypecaller_gvcf"
,
"haplotypecaller"
))),
default
=
Some
(
List
(
"haplotypecaller_gvcf"
,
"haplotypecaller"
))),
"use_indel_realigner"
->
Question
.
boolean
(
"use_indel_realigner"
,
default
=
Some
(
true
)),
"use_base_recalibration"
->
Question
.
boolean
(
"use_base_recalibration"
,
default
=
Some
(
true
))
)
...
...
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