Changed default

78669bf0 · Peter van 't Hof · 8492af35 · 78669bf0
Commit 78669bf0 authored Dec 18, 2016 by Peter van 't Hof
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/template/Shiva.scala .../nl/lumc/sasc/biopet/pipelines/shiva/template/Shiva.scala +1 -1

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--- a/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/template/Shiva.scala
+++ b/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/template/Shiva.scala
@@ -21,7 +21,7 @@ object Shiva extends TemplateTool {
    map ++ Reference.askReference ++
      Map(
        "variantcallers" -> Question.list("Variantcallers", posibleValues = possibleVariantcallers,
-          default = Some(List("unifiedgenotyper", "haplotypecaller_gvcf", "haplotypecaller"))),
+          default = Some(List("haplotypecaller_gvcf", "haplotypecaller"))),
        "use_indel_realigner" -> Question.boolean("use_indel_realigner", default = Some(true)),
        "use_base_recalibration" -> Question.boolean("use_base_recalibration", default = Some(true))
      )