@@ -56,6 +56,8 @@ class HaplotypeCaller(val parent: Configurable) extends CommandLineGATK with Sca
@Argument(fullName="maxGGAARExtension",shortName="maxGGAARExtension",doc="the maximum extent into the full active region extension that we're willing to go in genotyping our events for GGA mode",required=false,exclusiveOf="",validation="")
/** Include at least this many bases around an event for calling indels */
@Argument(fullName="paddingAroundIndels",shortName="paddingAroundIndels",doc="Include at least this many bases around an event for calling indels",required=false,exclusiveOf="",validation="")