Commit 7725a902 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Remove bam.bai input file

parent 64de449b
...@@ -41,11 +41,6 @@ class DellyCaller(val root: Configurable) extends BiopetCommandLineFunction with ...@@ -41,11 +41,6 @@ class DellyCaller(val root: Configurable) extends BiopetCommandLineFunction with
@Argument(doc = "What kind of analysis to run: DEL,DUP,INV,TRA") @Argument(doc = "What kind of analysis to run: DEL,DUP,INV,TRA")
var analysistype: String = _ var analysistype: String = _
override def beforeGraph(): Unit = {
super.beforeGraph()
deps ::= new File(input.getParentFile, input.getName + ".bai")
}
def cmdLine = required(executable) + def cmdLine = required(executable) +
"-t" + required(analysistype) + "-t" + required(analysistype) +
"-o" + required(outputvcf) + "-o" + required(outputvcf) +
......
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