From 76488b88981f7a08ca1c17d4d0aba484645e5d5e Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Fri, 18 Sep 2015 14:00:49 +0200
Subject: [PATCH] Disable default toucan
---
.../scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
index 07d598f68..84456e534 100644
--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
@@ -299,7 +299,7 @@ trait ShivaTrait extends MultiSampleQScript with SummaryQScript with Reference {
addAll(vc.functions)
addSummaryQScript(vc)
- if (config("annotation", default = true).asBoolean) {
+ if (config("annotation", default = false).asBoolean) {
val toucan = new Toucan(this)
toucan.outputDir = new File(outputDir, "annotation")
toucan.inputVCF = vc.finalFile
--
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