diff --git a/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala b/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala index 4631a2867842e6f5397de588fc151ea1c8c081cf..d7a116106dbf6d421fb5ba76dfb0295031c9dde0 100644 --- a/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala +++ b/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala @@ -82,8 +82,6 @@ class Carp(val parent: Configurable) extends QScript with MultisampleMappingTrai bamMetricsFilter.summaryName = "bammetrics-filter" addSummaryQScript(bamMetricsFilter) - add(Bam2Wig(qscript, preProcessBam.get)) - val buildBamIndex = new BuildBamIndex(qscript) buildBamIndex.input = preProcessBam.get buildBamIndex.output = swapExt(preProcessBam.get.getParentFile, preProcessBam.get, ".bam", ".bai")