From 74f11c8ef734172cfc4fb0eae8dec4f2cb3ac018 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Thu, 5 Feb 2015 10:14:20 +0100
Subject: [PATCH] Added basic testing
---
.../lumc/sasc/biopet/tools/VcfStatsTest.scala | 77 +++++++++++++++++++
1 file changed, 77 insertions(+)
create mode 100644 public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/VcfStatsTest.scala
diff --git a/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/VcfStatsTest.scala b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/VcfStatsTest.scala
new file mode 100644
index 000000000..9ac90deec
--- /dev/null
+++ b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/VcfStatsTest.scala
@@ -0,0 +1,77 @@
+package nl.lumc.sasc.biopet.tools
+
+import org.scalatest.Matchers
+import org.scalatest.testng.TestNGSuite
+import org.testng.annotations.Test
+import scala.collection.mutable
+import VcfStats._
+
+/**
+ * Created by pjvan_thof on 2/5/15.
+ */
+class VcfStatsTest extends TestNGSuite with Matchers {
+
+ @Test
+ def testSampleToSampleStats: Unit = {
+ val s1 = SampleToSampleStats()
+ val s2 = SampleToSampleStats()
+ s1.alleleOverlap shouldBe 0
+ s1.genotypeOverlap shouldBe 0
+ s2.alleleOverlap shouldBe 0
+ s2.genotypeOverlap shouldBe 0
+
+ s1 += s2
+ s1.alleleOverlap shouldBe 0
+ s1.genotypeOverlap shouldBe 0
+ s2.alleleOverlap shouldBe 0
+ s2.genotypeOverlap shouldBe 0
+
+ s2.alleleOverlap = 2
+ s2.genotypeOverlap = 3
+
+ s1 += s2
+ s1.alleleOverlap shouldBe 2
+ s1.genotypeOverlap shouldBe 3
+ s2.alleleOverlap shouldBe 2
+ s2.genotypeOverlap shouldBe 3
+
+ s1 += s2
+ s1.alleleOverlap shouldBe 4
+ s1.genotypeOverlap shouldBe 6
+ s2.alleleOverlap shouldBe 2
+ s2.genotypeOverlap shouldBe 3
+ }
+
+ @Test
+ def testSampleStats: Unit = {
+ val s1 = SampleStats()
+ val s2 = SampleStats()
+
+ s1.sampleToSample += "s1" -> SampleToSampleStats()
+ s1.sampleToSample += "s2" -> SampleToSampleStats()
+ s2.sampleToSample += "s1" -> SampleToSampleStats()
+ s2.sampleToSample += "s2" -> SampleToSampleStats()
+
+ s1.sampleToSample("s1").alleleOverlap = 1
+ s2.sampleToSample("s2").alleleOverlap = 2
+
+ s1.genotypeStats += "1" -> mutable.Map(1 -> 1)
+ s2.genotypeStats += "2" -> mutable.Map(2 -> 2)
+
+ val ss1 = SampleToSampleStats()
+ val ss2 = SampleToSampleStats()
+
+ s1 += s2
+ s1.genotypeStats shouldBe mutable.Map("1" -> mutable.Map(1 -> 1), "2" -> mutable.Map(2 -> 2))
+ ss1.alleleOverlap = 1
+ ss2.alleleOverlap = 2
+ s1.sampleToSample shouldBe mutable.Map("s1" -> ss1, "s2" -> ss2)
+
+ s1 += s2
+ s1.genotypeStats shouldBe mutable.Map("1" -> mutable.Map(1 -> 1), "2" -> mutable.Map(2 -> 4))
+
+ s1 += s1
+ s1.genotypeStats shouldBe mutable.Map("1" -> mutable.Map(1 -> 2), "2" -> mutable.Map(2 -> 8))
+ }
+
+}
--
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