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biopet.biopet
Commits
74845bd6
Commit
74845bd6
authored
Apr 21, 2017
by
pjvan_thof
Browse files
Removing defaults
parent
3287d8c4
Changes
1
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Inline
Side-by-side
shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/Shiva.scala
View file @
74845bd6
...
...
@@ -44,12 +44,6 @@ class Shiva(val parent: Configurable) extends QScript with MultisampleMappingTra
Some
(
shiva
)
}
override
def
defaults
=
Map
(
"haplotypecaller"
->
Map
(
"stand_call_conf"
->
30
,
"stand_emit_conf"
->
0
),
"genotypegvcfs"
->
Map
(
"stand_call_conf"
->
30
,
"stand_emit_conf"
->
0
),
"unifiedgenotyper"
->
Map
(
"stand_call_conf"
->
30
,
"stand_emit_conf"
->
0
)
)
lazy
val
usePrintReads
:
Boolean
=
config
(
"use_printreads"
,
default
=
true
)
/** Method to make the variantcalling namespace of shiva */
...
...
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