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biopet.biopet
Commit 74845bd6 authored by pjvan_thof's avatar pjvan_thof
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Removing defaults

parent 3287d8c4
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/Shiva.scala
View file @ 74845bd6
......@@ -44,12 +44,6 @@ class Shiva(val parent: Configurable) extends QScript with MultisampleMappingTra
Some(shiva)
}
override def defaults = Map(
"haplotypecaller" -> Map("stand_call_conf" -> 30, "stand_emit_conf" -> 0),
"genotypegvcfs" -> Map("stand_call_conf" -> 30, "stand_emit_conf" -> 0),
"unifiedgenotyper" -> Map("stand_call_conf" -> 30, "stand_emit_conf" -> 0)
)
lazy val usePrintReads: Boolean = config("use_printreads", default = true)
/** Method to make the variantcalling namespace of shiva */
......
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