diff --git a/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/SeqStatTest.scala b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/SeqStatTest.scala index 9d454098cb3629c4d4e08b1ad40252d422a7520e..fd44e0263dee4e1d253bf57c093c4d40e19c6cb9 100644 --- a/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/SeqStatTest.scala +++ b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/SeqStatTest.scala @@ -89,10 +89,10 @@ class SeqStatTest extends TestNGSuite with MockitoSugar with Matchers { val seqstat = SeqStat baseHistogram(40) shouldEqual 5 - baseHistogram(39) shouldEqual 10 - baseHistogram(34) shouldEqual 15 - baseHistogram(33) shouldEqual 20 - baseHistogram(0) shouldEqual 20 + baseHistogram(39) shouldEqual 5 + baseHistogram(34) shouldEqual 5 + baseHistogram(33) shouldEqual 5 + baseHistogram(0) shouldEqual 5 } @Test def testArgsMinimum() = { diff --git a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala index a451d55d7e6d891e403a52ac0b0480fd3dc85dfe..42efd38eff9d92e936dc6790e51d277b9e1e1695 100644 --- a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala +++ b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala @@ -125,7 +125,7 @@ class Fastqc(root: Configurable) extends nl.lumc.sasc.biopet.extensions.Fastqc(r line <- qcModule.lines if !(line.startsWith("#") || line.startsWith(">")); values = line.split("\t") if values.size == 7 } yield (values(0), BasePositionStats(values(1).toDouble, values(2).toDouble, values(3).toDouble, - values(4).toDouble, values(5).toDouble, values(6).toDouble).toMap) + values(4).toDouble, values(5).toDouble, values(6).toDouble).toMap) tableContents.toMap } } else Map()