Commit 733260e8 authored by Peter van 't Hof's avatar Peter van 't Hof

Added reference

parent 9ef784e9
...@@ -25,10 +25,12 @@ class BamStats(val root: Configurable) extends ToolCommandFunction with Referenc ...@@ -25,10 +25,12 @@ class BamStats(val root: Configurable) extends ToolCommandFunction with Referenc
override def defaultThreads = 3 override def defaultThreads = 3
override def defaultCoreMemory = 5.0 override def defaultCoreMemory = 5.0
override def dictRequired = true
override def beforeGraph() { override def beforeGraph() {
super.beforeGraph() super.beforeGraph()
jobOutputFile = new File(outputDir, ".bamstats.out") jobOutputFile = new File(outputDir, ".bamstats.out")
if (reference == null) reference = referenceFasta()
} }
/** Creates command to execute extension */ /** Creates command to execute extension */
......
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