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biopet.biopet
Commit 733260e8 authored by Peter van 't Hof's avatar Peter van 't Hof
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Added reference

parent 9ef784e9
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biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala
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......@@ -25,10 +25,12 @@ class BamStats(val root: Configurable) extends ToolCommandFunction with Referenc
override def defaultThreads = 3
override def defaultCoreMemory = 5.0
override def dictRequired = true
override def beforeGraph() {
super.beforeGraph()
jobOutputFile = new File(outputDir, ".bamstats.out")
if (reference == null) reference = referenceFasta()
}
/** Creates command to execute extension */
......
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