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biopet.biopet
Commits
733260e8
Commit
733260e8
authored
Nov 18, 2016
by
Peter van 't Hof
Browse files
Added reference
parent
9ef784e9
Changes
1
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biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala
View file @
733260e8
...
...
@@ -25,10 +25,12 @@ class BamStats(val root: Configurable) extends ToolCommandFunction with Referenc
override
def
defaultThreads
=
3
override
def
defaultCoreMemory
=
5.0
override
def
dictRequired
=
true
override
def
beforeGraph
()
{
super
.
beforeGraph
()
jobOutputFile
=
new
File
(
outputDir
,
".bamstats.out"
)
if
(
reference
==
null
)
reference
=
referenceFasta
()
}
/** Creates command to execute extension */
...
...
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