From 72de7b9d4626c05f119076a03e9d0b7b9d6f290f Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 20 Oct 2015 19:59:25 +0200
Subject: [PATCH] Remove fixme
---
.../nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala | 1 -
1 file changed, 1 deletion(-)
diff --git a/public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala b/public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
index 3e38aa9aa..76685a427 100644
--- a/public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
+++ b/public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
@@ -172,7 +172,6 @@ class BamMetrics(val root: Configurable) extends QScript with SummaryQScript wit
val coverageFile = new File(targetDir, inputBam.getName.stripSuffix(".bam") + ".coverage")
- //FIXME:should use piping
val bedCov = BedtoolsCoverage(this, inputBam, intervals.bed, coverageFile, depth = true)
val covStats = CoverageStats(this, coverageFile, targetDir)
covStats.title = Some("Coverage for " + targetName)
--
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