diff --git a/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala b/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala index 60842818802d4a7cfecabb0141cb1273c790b88b..3da6d434da304c4fa5eb9dabded3fd266fdb3800 100644 --- a/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala +++ b/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala @@ -35,7 +35,7 @@ class ShivaReport(val root: Configurable) extends ReportBuilderExtension { object ShivaReport extends ShivaReportTrait /** Trait for report generation for Shiva pipeline, this can be extended */ -trait ShivaReportTrait extends MultisampleMappingReportTrait { +trait ShivaReportTrait extends MultisampleMappingReportTrait { def variantcallingExecuted = summary.getValue("shiva", "settings", "multisample_variantcalling") match { case Some(true) => true