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biopet.biopet
Commits
72a84926
Commit
72a84926
authored
Nov 18, 2016
by
Peter van 't Hof
Browse files
Adding output file
parent
adc39c81
Changes
1
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Inline
Side-by-side
biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala
View file @
72a84926
...
...
@@ -26,6 +26,11 @@ class BamStats(val root: Configurable) extends ToolCommandFunction with Referenc
override
def
defaultThreads
=
3
override
def
defaultCoreMemory
=
5.0
override
def
beforeGraph
()
{
super
.
beforeGraph
()
jobOutputFile
=
new
File
(
outputDir
,
".bamstats.out"
)
}
/** Creates command to execute extension */
override
def
cmdLine
=
super
.
cmdLine
+
required
(
"-b"
,
bamFile
)
+
...
...
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