Adding output file

72a84926 · Peter van 't Hof · adc39c81 · 72a84926
Commit 72a84926 authored Nov 18, 2016 by Peter van 't Hof
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biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala ...scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala +5 -0

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--- a/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala
+++ b/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala
@@ -26,6 +26,11 @@ class BamStats(val root: Configurable) extends ToolCommandFunction with Referenc
  override def defaultThreads = 3
  override def defaultCoreMemory = 5.0

+  override def beforeGraph() {
+    super.beforeGraph()
+    jobOutputFile = new File(outputDir, ".bamstats.out")
+  }
+
  /** Creates command to execute extension */
  override def cmdLine = super.cmdLine +
    required("-b", bamFile) +