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biopet.biopet
Commit 72a84926 authored by Peter van 't Hof's avatar Peter van 't Hof
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Adding output file

parent adc39c81
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biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala
View file @ 72a84926
......@@ -26,6 +26,11 @@ class BamStats(val root: Configurable) extends ToolCommandFunction with Referenc
override def defaultThreads = 3
override def defaultCoreMemory = 5.0
override def beforeGraph() {
super.beforeGraph()
jobOutputFile = new File(outputDir, ".bamstats.out")
}
/** Creates command to execute extension */
override def cmdLine = super.cmdLine +
required("-b", bamFile) +
......
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