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Commit 719d854f authored by Peter van 't Hof's avatar Peter van 't Hof
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Change aggregation

parent 748dd6c2
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biopet-aggregate/copy-src.sh deleted 100755 → 0
View file @ 748dd6c2
#!/bin/bash
DIR=`readlink -f \`dirname $0\``
cp -r $DIR/../*/*/src/* $DIR/src
biopet-aggregate/pom.xml
View file @ 719d854f
......@@ -2,45 +2,42 @@
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<parent>
<artifactId>BiopetRoot</artifactId>
<groupId>nl.lumc.sasc</groupId>
<version>0.6.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>
<artifactId>BiopetAggregate</artifactId>
<packaging>pom</packaging>
<dependencies>
<dependency>
<groupId>org.testng</groupId>
<artifactId>testng</artifactId>
<version>6.8</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-all</artifactId>
<version>1.9.5</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.scalatest</groupId>
<artifactId>scalatest_2.10</artifactId>
<version>2.2.1</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetProtectedPackage</artifactId>
<version>0.6.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>18.0</version>
</dependency>
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.6.0-SNAPSHOT</version>
<relativePath>../public</relativePath>
</parent>
</dependencies>
<modules>
<module>../public/biopet-core</module>
<module>../public/biopet-public-package</module>
<module>../public/bammetrics</module>
<module>../public/flexiprep</module>
<module>../public/gentrap</module>
<module>../public/mapping</module>
<module>../public/sage</module>
<module>../public/kopisu</module>
<module>../public/gears</module>
<module>../public/bam2wig</module>
<module>../public/carp</module>
<module>../public/toucan</module>
<module>../public/shiva</module>
<module>../public/basty</module>
<module>../public/biopet-utils</module>
<module>../public/biopet-tools</module>
<module>../public/biopet-tools-extensions</module>
<module>../public/biopet-extensions</module>
<module>../public/biopet-tools-package</module>
<module>../protected/biopet-gatk-extensions</module>
<module>../protected/biopet-gatk-pipelines</module>
<module>../protected/biopet-protected-package</module>
</modules>
</project>
\ No newline at end of file
biopet-aggregate/rm-src.sh deleted 100755 → 0
View file @ 748dd6c2
#!/bin/bash
DIR=`readlink -f \`dirname $0\``
rm -r $DIR/src/main $DIR/src/test
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