Commit 70865194 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix queue wrapper

parent 08eb14a4
......@@ -40,11 +40,11 @@ class VcfFilter(val root: Configurable) extends BiopetJavaCommandLineFunction {
override def commandLine = super.commandLine +
required("-I", inputVcf) +
required("-o", outputVcf) +
optional("-minSampleDepth", minSampleDepth) +
optional("-minTotalDepth", minTotalDepth) +
optional("-minAlternateDepth", minAlternateDepth) +
optional("-minSamplesPass", minSamplesPass) +
conditional(filterRefCalls, "-filterRefCalls")
optional("--minSampleDepth", minSampleDepth) +
optional("--minTotalDepth", minTotalDepth) +
optional("--minAlternateDepth", minAlternateDepth) +
optional("--minSamplesPass", minSamplesPass) +
conditional(filterRefCalls, "--filterRefCalls")
}
object VcfFilter extends ToolCommand {
......
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