diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Snptest.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Snptest.scala index 62668f454748d36bd20ee6383519963de949a400..1627c55daf45f2125f8be0ce4f0de622a2799f86 100644 --- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Snptest.scala +++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Snptest.scala @@ -80,7 +80,6 @@ class Snptest(val root: Configurable) extends BiopetCommandLineFunction with Ref var meanBf: List[String] = config("mean_bf", default = Nil) var analysisDescription: Option[String] = config("analysis_description") - var analysisName: Option[String] = config("analysis_name") var chunk: Option[Int] = config("chunk") var debug: Boolean = config("debug", default = false) var hwe: Boolean = config("hwe", default = false) @@ -170,5 +169,4 @@ class Snptest(val root: Configurable) extends BiopetCommandLineFunction with Ref conditional(useRawPhenotypes, "-use_raw_phenotypes") + conditional(noClobber, "-no_clobber") } - }