Commit 6e5dd48d authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed output files name

parent a9ea63e5
......@@ -51,7 +51,8 @@ class PickClosedReferenceOtus(val root: Configurable) extends BiopetCommandLineF
var suppressTaxonomyAssignment: Boolean = config("suppress_taxonomy_assignment", default = false)
def otuTable = new File(outputDir, "otu_table.biom")
def otuMap = new File(outputDir, "uclust_ref_picked_otus" + File.separator + "seqs_otus.txt")
def otuMap = new File(outputDir, "uclust_ref_picked_otus" + File.separator +
inputFasta.getName.stripSuffix(".fna").stripSuffix(".fasta").stripSuffix(".fa") + "_otus.txt")
private var outputFiles: List[File] = Nil
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