From 6d4fa4c5de6cb0e4df9a4434a5c2a03bae3d4d4e Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Fri, 13 Feb 2015 15:17:03 +0100
Subject: [PATCH] Set default vmem to 5G
---
.../src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala | 2 ++
1 file changed, 2 insertions(+)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
index aaa2797b6..d5f4ad211 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
@@ -51,6 +51,8 @@ class FastqSync(val root: Configurable) extends BiopetJavaCommandLineFunction {
@Output(doc = "Sync statistics", required = true)
var outputStats: File = _
+ override val defaultVmem = "5G"
+
// executed command line
override def commandLine =
super.commandLine +
--
GitLab