Commit 6c521e70 authored by Peter van 't Hof's avatar Peter van 't Hof

Fixed adapter feeding

parent 0dc6aa4c
......@@ -34,10 +34,10 @@ class Cutadapt(root: Configurable, fastqc: Fastqc) extends nl.lumc.sasc.biopet.e
adapter ++=
val customAdaptersFront: Map[String, Any] = config("custom_adapters_front", default = Map())
front ++=
front ++=
val customAdaptersAny: Map[String, Any] = config("custom_adapters_any", default = Map())
anywhere ++=
anywhere ++=
/** Clipped adapter names from FastQC */
protected def seqToName: Map[String, String] = {
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