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biopet.biopet
Commit 6c521e70 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fixed adapter feeding

parent 0dc6aa4c
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flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala
View file @ 6c521e70
......@@ -34,10 +34,10 @@ class Cutadapt(root: Configurable, fastqc: Fastqc) extends nl.lumc.sasc.biopet.e
adapter ++= customAdaptersEnd.values.map(_.toString)
val customAdaptersFront: Map[String, Any] = config("custom_adapters_front", default = Map())
front ++= customAdaptersEnd.values.map(_.toString)
front ++= customAdaptersFront.values.map(_.toString)
val customAdaptersAny: Map[String, Any] = config("custom_adapters_any", default = Map())
anywhere ++= customAdaptersEnd.values.map(_.toString)
anywhere ++= customAdaptersAny.values.map(_.toString)
/** Clipped adapter names from FastQC */
protected def seqToName: Map[String, String] = {
......
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