From 6c2a31256454695902590e29edc58074349f5f88 Mon Sep 17 00:00:00 2001
From: Sander Bollen <a.h.b.bollen@lumc.nl>
Date: Mon, 13 Apr 2015 10:52:53 +0200
Subject: [PATCH] naming conventions of default fields
---
.../src/main/scala/nl/lumc/sasc/biopet/tools/VcfToTsv.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfToTsv.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfToTsv.scala
index 063eca3d7..3cbe71ca3 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfToTsv.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfToTsv.scala
@@ -58,7 +58,7 @@ object VcfToTsv extends ToolCommand {
}
}
- val defaultFields = List("chr", "pos", "id", "ref", "alt", "qual")
+ val defaultFields = List("CHROM", "POS", "ID", "REF", "ALT", "QUAL")
def main(args: Array[String]): Unit = {
val argsParser = new OptParser
--
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