diff --git a/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/Measurement.scala b/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/Measurement.scala index 8e6a5bbd6e93e89628e92e4dbbbf86ddb9d30afa..095a01fdbb5ddf2024198dc01f11bd79b89c53de 100644 --- a/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/Measurement.scala +++ b/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/Measurement.scala @@ -47,11 +47,11 @@ trait Measurement extends SummaryQScript with Reference { qscript: QScript => extraSummaryFiles += s"${name}_table" -> outputFile } - def addHeatmapJob(countTable: File, outputFile: File, name: String): Unit = { + def addHeatmapJob(countTable: File, outputFile: File, name: String, countType: Option[String] = None): Unit = { val job = new PlotHeatmap(qscript) job.input = countTable job.output = outputFile - job.countType = Some(name) + job.countType = countType add(job) extraSummaryFiles += s"${name}_heatmap" -> outputFile }