diff --git a/public/bam2wig/src/main/scala/nl/lumc/sasc/biopet/pipelines/bamtobigwig/Bam2Wig.scala b/public/bam2wig/src/main/scala/nl/lumc/sasc/biopet/pipelines/bamtobigwig/Bam2Wig.scala index 8c1f543bf551d7b828bf17ea4afda47c1bf036dd..4b43bd5fd1a88d5e8ba39fe6ad012d43bc303a6a 100644 --- a/public/bam2wig/src/main/scala/nl/lumc/sasc/biopet/pipelines/bamtobigwig/Bam2Wig.scala +++ b/public/bam2wig/src/main/scala/nl/lumc/sasc/biopet/pipelines/bamtobigwig/Bam2Wig.scala @@ -38,7 +38,7 @@ class Bam2Wig(val root: Configurable) extends QScript with BiopetQScript { val wigToBigWig = new WigToBigWig(this) wigToBigWig.inputWigFile = igvCount.wig.get wigToBigWig.inputChromSizesFile = bs.chromSizesFile - wigToBigWig.outputBigWig = swapExt(outputDir, bamFile, ".bam", ".bigwig") + wigToBigWig.outputBigWig = swapExt(outputDir, bamFile, ".bam", ".bw") add(wigToBigWig) } }