Commit 67f8439a authored by pjvan_thof's avatar pjvan_thof
Browse files

Fixing paired flag for library metrics

parent f67a022c
......@@ -236,7 +236,7 @@ trait MultisampleMappingTrait extends MultiSampleQScript with Reference { qscrip
bamMetrics.libId = Some(libId)
bamMetrics.inputBam = bamFile.get
bamMetrics.outputDir = new File(libDir, "metrics")
bamMetrics.paired = inputR2.isDefined
bamMetrics.paired = inputR2.isDefined || inputBam.isDefined
if (config("execute_bam2wig", default = true)) add(Bam2Wig(qscript, bamFile.get))
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