Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
67f8439a
Commit
67f8439a
authored
Jul 14, 2017
by
pjvan_thof
Browse files
Fixing paired flag for library metrics
parent
f67a022c
Changes
1
Hide whitespace changes
Inline
Side-by-side
mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMapping.scala
View file @
67f8439a
...
...
@@ -236,7 +236,7 @@ trait MultisampleMappingTrait extends MultiSampleQScript with Reference { qscrip
bamMetrics
.
libId
=
Some
(
libId
)
bamMetrics
.
inputBam
=
bamFile
.
get
bamMetrics
.
outputDir
=
new
File
(
libDir
,
"metrics"
)
bamMetrics
.
paired
=
inputR2
.
isDefined
bamMetrics
.
paired
=
inputR2
.
isDefined
||
inputBam
.
isDefined
add
(
bamMetrics
)
if
(
config
(
"execute_bam2wig"
,
default
=
true
))
add
(
Bam2Wig
(
qscript
,
bamFile
.
get
))
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment