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biopet.biopet
Commits
67a6842b
Commit
67a6842b
authored
Jan 24, 2017
by
Peter van 't Hof
Browse files
Fix report name
(cherry picked from commit
57aed757
)
parent
f9b25fde
Changes
1
Hide whitespace changes
Inline
Side-by-side
gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsReport.scala
View file @
67a6842b
...
...
@@ -93,8 +93,8 @@ object GearsReport extends MultisampleReportBuilder {
"Unique mappings"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
,
Map
(
"summaryStatsTag"
->
"centrifuge_unique_report"
)
)),
Map
(
"summaryModuleTag"
->
"gearscentrifuge"
)))
else
Nil
)
:::
(
if
(
krakenExecuted
)
List
(
"Kraken"
->
ReportPage
(
List
(),
List
(
"Kr
aken analysis
"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
else
Nil
)
:::
(
if
(
krakenExecuted
)
List
(
"Kraken
analysis
"
->
ReportPage
(
List
(),
List
(
"Kr
ona plot
"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
)),
Map
()))
else
Nil
)
:::
(
if
(
qiimeClosesOtuTable
.
isDefined
)
List
(
"Qiime closed reference analysis"
->
ReportPage
(
List
(),
List
(
"Krona plot"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/qiimeKrona.ssp"
...
...
@@ -127,8 +127,8 @@ object GearsReport extends MultisampleReportBuilder {
"Unique mappings"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
,
Map
(
"summaryStatsTag"
->
"centrifuge_unique_report"
)
)),
Map
(
"summaryModuleTag"
->
"gearscentrifuge"
)))
else
Nil
)
:::
(
if
(
krakenExecuted
)
List
(
"Kraken"
->
ReportPage
(
List
(),
List
(
"Kr
aken analysis
"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
else
Nil
)
:::
(
if
(
krakenExecuted
)
List
(
"Kraken
analysis
"
->
ReportPage
(
List
(),
List
(
"Kr
ona plot
"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
)),
Map
()))
else
Nil
)
:::
(
if
(
qiimeClosesOtuTable
.
isDefined
)
List
(
"Qiime closed reference analysis"
->
ReportPage
(
List
(),
List
(
"Krona plot"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/qiimeKrona.ssp"
...
...
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