From 6748aa4ede3a5c27e489ff47b807d3b8bc6d6201 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 1 Feb 2016 13:15:45 +0100
Subject: [PATCH] Remove bed annotation
---
.../lumc/sasc/biopet/core/annotations/Annotations.scala | 9 ---------
1 file changed, 9 deletions(-)
diff --git a/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/annotations/Annotations.scala b/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/annotations/Annotations.scala
index 8ecc01434..c2f688804 100644
--- a/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/annotations/Annotations.scala
+++ b/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/annotations/Annotations.scala
@@ -17,15 +17,6 @@ trait AnnotationGtf extends BiopetQScript { qscript: QScript =>
}
}
-trait AnnotationBed extends BiopetQScript { qscript: QScript =>
- /** GTF reference file */
- lazy val annotationBed: File = {
- val file: File = config("annotation_bed", freeVar = true)
- inputFiles :+ InputFile(file, config("annotation_bed_md5", freeVar = true))
- file
- }
-}
-
trait AnnotationRefFlat extends BiopetQScript { qscript: QScript =>
/** GTF reference file */
lazy val annotationRefFlat = new LazyCheck({
--
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