From 62ed4c90ffe78d86aa6ed5f0a8819c66c3635125 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Fri, 18 Jul 2014 15:54:42 +0200
Subject: [PATCH] update for Queue/GATK 3.2-2
---
flexiprep/pom.xml | 6 +++---
mapping/pom.xml | 6 +++---
pipeline-template/pom.xml | 6 +++---
3 files changed, 9 insertions(+), 9 deletions(-)
diff --git a/flexiprep/pom.xml b/flexiprep/pom.xml
index 023eb549c..594d5bdc1 100644
--- a/flexiprep/pom.xml
+++ b/flexiprep/pom.xml
@@ -48,9 +48,9 @@
<version>0.1.3</version>
</dependency>
<dependency>
- <groupId>org.broadinstitute.sting</groupId>
+ <groupId>org.broadinstitute.gatk</groupId>
<artifactId>queue-package</artifactId>
- <version>3.2</version>
+ <version>3.2-2</version>
</dependency>
</dependencies>
<build>
@@ -112,7 +112,7 @@
</transformers>
<artifactSet>
<excludes>
- <exclude>org.broadinstitute.sting:queue-package</exclude>
+ <exclude>org.broadinstitute.gatk:queue-package</exclude>
<exclude>junit:junit</exclude>
<exclude>org.scala-lang:scala-compiler</exclude>
<exclude>org.scala-lang:scala-library</exclude>
diff --git a/mapping/pom.xml b/mapping/pom.xml
index 0940167c6..409c8a2ee 100644
--- a/mapping/pom.xml
+++ b/mapping/pom.xml
@@ -58,9 +58,9 @@
<version>0.1.3</version>
</dependency>
<dependency>
- <groupId>org.broadinstitute.sting</groupId>
+ <groupId>org.broadinstitute.gatk</groupId>
<artifactId>queue-package</artifactId>
- <version>3.2</version>
+ <version>3.2-2</version>
</dependency>
</dependencies>
<build>
@@ -122,7 +122,7 @@
</transformers>
<artifactSet>
<excludes>
- <exclude>org.broadinstitute.sting:queue-package</exclude>
+ <exclude>org.broadinstitute.gatk:queue-package</exclude>
<exclude>junit:junit</exclude>
<exclude>org.scala-lang:scala-compiler</exclude>
<exclude>org.scala-lang:scala-library</exclude>
diff --git a/pipeline-template/pom.xml b/pipeline-template/pom.xml
index 1e77822db..ffebc17c5 100644
--- a/pipeline-template/pom.xml
+++ b/pipeline-template/pom.xml
@@ -48,9 +48,9 @@
<version>0.1.3</version>
</dependency>
<dependency>
- <groupId>org.broadinstitute.sting</groupId>
+ <groupId>org.broadinstitute.gatk</groupId>
<artifactId>queue-package</artifactId>
- <version>3.2</version>
+ <version>3.2-2</version>
</dependency>
</dependencies>
<build>
@@ -112,7 +112,7 @@
</transformers>
<artifactSet>
<excludes>
- <exclude>org.broadinstitute.sting:queue-package</exclude>
+ <exclude>org.broadinstitute.gatk:queue-package</exclude>
<exclude>junit:junit</exclude>
<exclude>org.scala-lang:scala-compiler</exclude>
<exclude>org.scala-lang:scala-library</exclude>
--
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