Commit 6264c8cd authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Minor changes to options

parent 7825fcdf
......@@ -70,6 +70,7 @@ trait ShivaVariantcallingTrait extends SummaryQScript with SampleLibraryTag {
val vcfStats = new VcfStats(qscript)
vcfStats.input = finalFile
vcfStats.setOutputDir(new File(outputDir, "vcfstats"))
vcfStats.infoTags :+= cv.setKey
add(vcfStats)
addSummarizable(vcfStats, namePrefix + "-vcfstats-final")
......@@ -147,6 +148,7 @@ trait ShivaVariantcallingTrait extends SummaryQScript with SampleLibraryTag {
cv.inputFiles = rawFiles
cv.outputFile = outputFile
cv.setKey = "null"
cv.excludeNonVariants = true
add(cv)
}
}
......
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